PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16589_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 300aa    MW: 34619.7 Da    PI: 9.2769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16589_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.5e-13121170152
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIk 52 
                  ++ +hn+ Er RR+++N  ++ Lr llP+ +   +++Kls  +++  +v+YI 
  RrC16589_p1 121 KKLNHNASERDRRRKLNALYSSLRALLPPsD---QKRKLSIPMTVAGVVKYIP 170
                  6789*************************66...9999**************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.94E-11120177No hitNo description
SuperFamilySSF474591.83E-13120197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.973120172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-11121191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-8126178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
IDRFHLKFVL IIKVSLSHLL NFLSSSLLQI IERTIMCALT PMFPSYQQEW YSTSTMESPW  60
LDSFSPTLPS FLYPSLDQPD EFKNHNVILH PHHMNLAHIN GSNKNSNNDQ KGDERELVLE  120
KKLNHNASER DRRRKLNALY SSLRALLPPS DQKRKLSIPM TVAGVVKYIP EQKQELERLS  180
RRKEELMKTM SSKTATLSHQ QEQLKHRAMM DSIDSSPQKI AANWITDTEI AVQIATWKWA  240
SISDMLLRLE ENGLNVTSVS SSSVSSTARI FYTMHLQMRG DCKVRLEELS DMLFGLRQSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530501e-173AK353050.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130803.11e-150PREDICTED: transcription factor bHLH101 isoform X2
SwissprotQ9FYE61e-96BH101_ARATH; Transcription factor bHLH101
TrEMBLA0A078CVL51e-139A0A078CVL5_BRANA; DNA topoisomerase 2
STRINGBra005795.1-P1e-116(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04150.11e-85bHLH family protein